Sentences with phrase «orthologous sequences»

S4, A and B), despite the outgroups having only ~ 30 % orthologous sequences in the TENT alignment (e.g., fig.

Further exploring data amount, we used the assembled ~ 1.1 - billion - bp chicken genome (40) as a reference to generate a 322 - million - bp MULTIZ alignment of putatively orthologous genome regions across all species, comprising ~ 30 % of an average assembled avian genome and corresponding to the maximal orthologous sequence obtainable across all orders under our homology criteria (SM3).

Not exact matches

«However, because SIF - seq only requires DNA sequence from a mammal and can be used in a variety of cell types, it should be possible to compare the neuronal enhancers present in a large genomic region from human to the neuronal enhancers present in the orthologous chimpanzee region.

From these efforts, we identified a high - quality orthologous gene set across avian species, consisting of exons from 8251 syntenic protein - coding genes (~ 40 % of the proteome), introns from 2516 of these genes, and a nonoverlapping set of 3769 ultraconserved elements (UCEs) with ~ 1000 bp of flanking sequences.

In the present study, we used a combination of BAC clone contig construction, polymorphism analysis of DNA from congenic strains, and sequence mining of the human orthologous region to generate an integrated map of the Idd10 region on mouse chromosome 3.