Incorporating a synthetic
phage genome into Gram - positive bacteria has so far been very problematic, as their cell walls are so thick.
Students in the program learn to isolate and characterize bacteriophages, annotate
the phage genomes, and then submit the sequences to a national database.
This enables scientists to genetically modify
phage genomes systematically, provide them with additional functionality, and finally reactivate them in a bacterial «surrogate» — a cell - wall deficient Listeria cell, or L - form.
Not exact matches
It's developing a machine - learning algorithm that uses data from the
genomes of both
phages and bacteria.
«We found that lysogenic
phages [
phages that insert their DNA into the
genomes of their hosts] are abundant within the bacteria of the bladder,» said Dr. Putonti.
To test the viability of these sequences, the investigators selected one of the 181 bacterial
genomes, and found that they were able to induce one of several
phage sequences within that
genome to reproduce.
Sometimes, however,
phages insert their own genetic material into a host's
genome, then lie dormant until a trigger causes them to reawaken and multiply later.
When levels of arbitrium build up — after a large number of cells have died —
phages stop killing off the remaining bacteria and retreat to lie dormant in bacterial
genomes instead.
That changed what the
phage did: it was now more likely to slip its
genome into the bacteria, rather than kill it.
Bellen and Venken attached artificial docking sites to
phages — a virus that targets bacteria — which they introduced in both the bacteria and in the fruit fly
genomes to act as sticky points for the DNA segment being implanted in the latter's
genome.
Related sites Web site for the Department of Energy program that supports Venter and other
genome - related projects Series of lectures on the biology of
phages (PDF)
They also noticed that the new virus, named Bacillus
phage Tsamsa, is unusually large, with a giant head, a long tail and a large
genome, placing it among the largest known bacteriophages.
For example, a gene was only integrated into an existing
genome in a tiny fraction of the
phages.
The loxP sequence does not occur naturally in any known
genome other than P1
phage, and is long enough that there is virtually no chance of it occurring randomly.
After the last coffee break Emmanuelle Charpentier (Umeå University, Sweden) entered the scene and shared her knowledge about how to use
phages (viruses that target bacteria) for
genome engineering via CRISPRs.