Sentences with phrase «pooled sample»

There are only a handful of labs that do not pool samples and perform separate analyses on each sample submitted for testing.

Dogs and cats were contaminated with 48 of 70 chemicals tested, including 43 chemicals at higher levels than those typically found in people, according to our study of plastics and food packaging chemicals, heavy metals, fire retardants, and stain - proofing chemicals in pooled samples of blood and urine from 20 dogs and 37 cats collected at a Virginia veterinary clinic.

Determining the composition of pooled samples can be difficult, especially at the scale of modern sequencing data and reference databases.

Plasma hormone levels were determined from pooled samples obtained between 6 and 8 a.m. after an overnight fast on days 5 — 7 (follicular), 12 — 15 (peri-ovulatory) and 21 — 23 (luteal).

We first performed pooled sample analysis, then individual sample analysis, and then pathway analysis using the observed proteins.

VarScan: Variant detection in massively parallel sequencing of individual and pooled samples Bioinformatics DOI: 10.1093 / bioinformatics / btp373

Deep sequencing of pooled samples, and multiplexed / barcoded sequencing runs will present new challenges for VarScan and other in - house tools.

«Pampers ® Baby Dry Mini» contained up to 38.4 micrograms of TBT per kilogram, a much higher level then in the first tests of a pool sample published last Friday.

Based on the pooled sample, researchers estimated average annual numbers and costs for the U.S. population.

Method to divine one person's DNA from a pooled sample is a boon for forensics and a bane for privacy advocates

But that initial methods development would evolve into VarScan, our tool for SNP and indel calling in individual and pooled samples.

Determining the composition of pooled samples can be difficult, especially at the scale of modern data.

Pericytes from mouse brains were isolated from six pooled samples of the same genotype50.

This kit requires a clean - up step but due to the increased binding of the column sufficient DNA is obtained from one column without the need to pool samples for library preparation.

Deep sequencing of pooled samples is one area, unfortunately, where Maq and RunMapper / Newbler continue to struggle.

Online today at Bioinformatics is our publication of variant detection in massively parallel sequencing of individual and pooled samples.

Taken together, these results support the utility of VarScan for variant detection in next - gen sequencing, and demonstrate the feasibility of large - scale mutational profiling by deep resequencing of pooled samples.

Combining immunoaffinity - based partitioning, SCX fractionation and LC - MS / MS, we identified approximately 30,000 peptides for each pooled sample corresponding to 2,783 nonredundant proteins in CFS patient samples and 2,768 proteins in nPTLS patient samples, compared to the 2,630 proteins present in the CSF of healthy normal control subjects.

Due to the limit in sample volume, the CSF samples used in individual LC - MS analyses were not immunoaffinity depleted and fractionated, and therefore had much lower proteome coverage compared to the pooled samples.

The Updated Tables are represented in two separate volumes: Volume One contains data tables for chemicals measured in the general U.S. population; Volume Two contains data tables for persistent organic pollutants and pesticides measured in pooled samples and adult cigarette smokers and nonsmokers.

We found that gender, amount of exercise, amount of activities, time spent alone, age of arrival to the household, number of adults in the household, number of diagnosed diseases, type of food, or birth place were not associated with TC in any of the analyses in a pooled sample or a breed - specific analysis (data not shown), and these same factors were dropped from the final models (data not shown).

The Updated Tables are represented in two separate volumes: Volume One contains data tables for chemicals measured in the general U.S. population; Volume Two contains data tables for persistent organic pollutants and pesticides measured in pooled samples and adult cigarette smokers and nonsmokers.

Factor Loadings on the General Factor (Pooled Sample) for Facebook Intrusion Questionnaire.

Internal consistency in our pooled sample was α =.90 at baseline and α =.91 at post intervention.