Sentences with phrase «predicted genes»

In essence, from a machine learning perspective, we are assessing if the cell type label can predict the gene expression.

Just a few months ago, I reviewed a paper demonstrating that regulatory variation near genes predicts gene dosage sensitivity.

Manor O and Segal E. GenoExp: a web tool for predicting gene expression levels from single nucleotide polymorphisms.

«We're still not very good at predicting genes in eukaryotes,» said Claire Fraser of The Institute for Genomic Research in Rockville, Maryland.

Furthermore, 19 additional predicted genes have high identity alignments to other VR sequences.

Of the 731 predicted genes on Mmu 16, 509 align with orthologs on the corresponding portions of the human genome, 44 are likely paralogous to these genes, and 164 genes have homologs elsewhere in the human genome; there are 14 genes for which we could find no human counterpart.

Sweeney predicts gene - doped athletes would readily surpass their personal best and could even smash world records.

Lu and his graduate students, Chen Liao and Andrew Blanchard, recently addressed the challenge by constructing an integrated modeling framework for quantitatively describing and predicting gene circuit behaviors.

The protein atlas now also includes protein evidence for all 20,083 predicted genes based on manual annotation from literature (UniProt), antibody - based profiling in cells, tissues and organs and analysis of transcripts using next generation sequencing in 11 cell lines of different origin.

«The significance of controlled conditions in lentiviral vector titration and in the use of multiplicity of infection (MOI) for predicting gene transfer events.»

Ninety - five (44 %) of the known and predicted genes match a Drosophila EST, and 144 (66 %) have clear similarities to proteins in other organisms.

With the substantial increase in predicted gene number and gene quality obtained with the OGSv2 gene set, it is clear that an updated annotation of infection responsive genes would be valuable.

(A) Predicted gene structures of neuronal innexins.

This makes them ideal to predict gene function, by transferring known functional annotations from orthologs in model organisms.

Examples include predicted genes revealed by genome sequencing [6] and RIKEN - derived genes [7](Figures S1A, S1G, S2B, and S3F).

«Our ability to predict the gene targets of enhancers so accurately enables us to link mutations in enhancers to the genes they target,» said Pollard.

In this study, researchers found that the Bt locus was delimited to a 442 - kb region on chromosome 5 that harbors 67 predicted genes.

«To address this problem, our lab has developed new methods to predict gene and protein functions.»

The team found that the genome contained just over 10,000 predicted genes.

Among the 472 predicted genes of the 407,339 - base pair genome are a variety of unexpected genes, most notably those involved in biosynthesis of ceramide, a sphingolipid known to induce apoptosis.

Over the past 18 months, as the sequence of the 2,272,351 building blocks of the N. meningitidis genome was being determined at The Institute for Genome Research (TIGR), in Rockville, MD, Rappuoli's team at Chiron's Immunological Research Institute of Siena, Italy, sifted through the 2,158 computer - predicted genes for promising vaccine candidates.

An extensive analysis of the whole - genome, including annotation of predicted genes and assignment of functional categories, analysis of chromosomal architecture and the distribution of transposable elements, and comparisons with other genomes, is presented with the publication of the sequences of chromosomes 1, 3, and 5.

Similarly, we aligned with BLAST all the OR cDNA sequences present in Ensembl and recovered four predicted genes that share high similarity to other ORs.

Recently, our team released an annotated genome assembly of C. krusei via NCBI Genbank, and we are currently working with the CDC to assemble genomes and predict genes for C. auris isolates from the other major clades and other closely related species; we plan to share these data in the coming weeks.

lactis genome has 2,365,589 units of DNA, which contain 2,310 predicted genes.