Sentences with phrase «reconstructing gene»

Then, methods for reconstructing gene regulatory networks from gene expression data will be looked.

The reconstructed gene models for VR genes based on the VNO RNAseq dataset, provided in GTF format.

The median length of Ensembl V2R genes is 2,559 nt, while for the V2R reconstructed gene models it is 2,912 nt (Figure 7C).

The reconstructed gene models for OR genes based on the OM RNAseq dataset, provided in GTF format.

The sequences of the reconstructed gene models for OR genes in FASTA format.

Not exact matches

Thanks to powerful gene - sequencing techniques developed in the past two decades during the race to decode the human genome, researchers are beginning to reconstruct what our ancestors» microbiomes looked like, potentially going back thousands of years.

The scientists also generated a panel of (reconstructed) ancestral and existing TRIM5 genes (19 total), expressed them in cultured cell lines, and exposed the cells to 16 different retroviruses (lentiviruses and others) to see which TRIM5 versions conferred resistance to which viruses.

The researchers compared the differences between the two sets of sequences to reconstruct how the H7N9 virus evolved through various species of birds and to determine the origin of genes.

This research shows how global studies of our genes can give insight into how our taste for different foods may have been influenced by variation in our ability to smell, and, excitingly, show that it is possible to see back into deep evolutionary time and reconstruct the sensory world of our distant ancestors.

As methods for studying and comparing genetic data improve, scientists are beginning to decode these marks to reconstruct the evolutionary history of species, as well as how variants of genes give rise to unique traits.

Researchers at Massachusetts Eye and Ear / Schepens Eye Research Institute have reconstructed an ancient virus that is highly effective at delivering gene therapies to the liver, muscle, and retina.

To reconstruct the ancient version of the F promoter — a DNA sequence of 200 base - pairs — the group compared 30 F type sequences found in mouse L1 genes.

He argues that current plans to reconstruct the history of human genes by sampling the DNA of exotic tribespeople throughout the world is fundamentally misguided.

To analyze these data, the team developed custom computer software to reconstruct how gene activity changes as motor neurons form.

According to Abouheif, Khila didn't just show that this new gene makes the water striders» fan; he also «reconstructs its evolutionary history, and then does the trademark ecological tests to show that it has an ecological function.»

The team used a new approach to gene sequencing that enabled them to completely reconstruct the virus» previously unknown genome in less than 24 hours — significantly faster than conventional sequencing techniques, which can take days to weeks.

It became clear that the history of all eukaryotes can not be reconstructed in any sensible tree based on one gene.

If the work proceeds as expected, «all interactions between genes, proteins, and small molecules will be revealed, and the whole cellular network will be reconstructed,» says Igor Goryanin, who heads cell modeling at GlaxoSmithKline in Stevenage, U.K.

He has spent the past few years comparing chimp genes with our own, trying to reconstruct the crucial mutations responsible for our differences.

Hope of reconstructing the ancestor from its inferred genes received new impetus three years ago when the first full DNA, or genome, of a bacterium was decoded.

Working back to the ancestor, an exercise based on the sequence of DNA letters in genes, resembles the way that linguists reconstruct the words of vanished mother - tongues from their living descendant languages.

This symposium intends to gather researchers interested in various aspects of floral evolution: from deciphering the genes and gene networks involved in specific trait evolution to reconstructing ancestral states of floral traits.

This finding supports a European contribution to the Mexican gene pool primarily by male settlers and confirms the effectiveness of employing the uniparentally - transmitted mtDNA as a tool to reconstruct a countryâ $ ™ s history.â $ Read more hereâ $ ¦

The primary objective of this working group is to bring together new and established researchers in mathematics, biology, and statistics in order to discuss challenges in a growing field that applies gene trees reconstructed from DNA sequence data to delimiting species.

Since each bacterium's genome contains thousands of genes and each gene can express a protein, this technique made it possible to translate the reconstructed DNA of the microbial community into hundreds of thousands of proteins, which are then grouped into about 10,000 protein families.

By reconstructing their genomes, the scientists learned that many of these life - forms had genes that make them exceptionally good at processing carbon monoxide and hydrogen.

When we compare the complete gene models we have reconstructed with those currently annotated, both the amount of the receptor transcript sequence, and the proportion that is unique between receptors increases substantially.

All genes with a lipocalin domain (IPR000566) were extracted from Ensembl version 68 and a phylogeny was reconstructed in MEGA using the neighbour - joining method with the Kimura - 2 parameter model of substitution [55].

OR and V1R genes typically have coding regions that span a single exon, but we identified 54 OR and 15 V1R genes where at least one of the reconstructed transcripts has an intron within the protein coding sequence (as annotated in Ensembl).

We next compared the 5 ′ ends of the OR gene models reconstructed here using Cufflinks, to the proposed transcription start sites (TSS) reported by Plessy et al. (2012) using nanoCAGE [29].

We similarly compared the 5 ′ ends in our reconstructed models to these data and found that a third of the receptor genes differ in less than 100 nucleotides and 80 % of the data is contained within a 1.5 kb window (Figure S8).

We next calculated the length for each receptor gene based on the existing Ensembl and our new reconstructed models.

The researchers were able to assign these genes to, or reconstruct the genomes in part or in whole for, 87 different bacterial species.

THE ROYAL TENENBAUMS By Kent Jones With the help of Gene Hackman, Gwyneth Paltrow, Ben Stiller, and Anjelica Huston, not to mention his usual partner in crime Owen Wilson, Wes Anderson has fashioned an epic comedy of loss in a poetically reconstructed Manhattan, a film that's both outrageously funny and deeply moving.

Working together, Kentucky and Indiana will build a new I - 65 bridge over the Ohio River, reconstruct the I - 64 / I - 65 / I - 71 Kennedy Interchange and build a new SR - 265 East End facility that includes a new bridge over the Ohio River and a tunnel connecting to the I - 265 Gene Snyder Freeway.