Sentences with word «seq»

The effect of slightly increasing the correlation of the first lag but running the simulation as a stationary series is to slightly elongate the typical length scale of the simulated process (Isaaks and Srivastava, p196 et seq show this very elegantly).

Visel, Pennacchio, Dickel and their colleagues developed SIF - seq in response to the need for a higher - throughput functional enhancer assay that can be used in a wide variety of cell types and developmental contexts.

At least a few of the following reasons that'll make you sure to include SEQ on your Australian itinerary.

The authors applied CHiP - Seq with 119 different DNA - binding proteins (including 87 sequence - specific transcription factors) to 72 cell types, finding:

«Salmon provides a much richer model of the RNA - seq experiment and of the possible biases that are known to occur during sequencing,» Kingsford said.

We conclude from the contrasting results that RNA - Seq technology provides superior insight into the milk fat layer transcriptome.

ChIP - Seq for DAXX was successful, as the strength of the signal in the experimental sample (Figure 1A, top panel) was high compared to the signal from the negative control, the input (Figure 1A, bottom panel).

The patented ELM - seq method relies on indirectly measuring the activity of a gene encoding a protein that adds a specific chemical «tag» on to DNA.

UniqSeq offers a simple, cost - effective solution for generating ChIP - Seq libraries from ChIP - derived DNA.

I have spent many years studying 2q23.1 deletion and duplication syndrome through genotype - phenotype, neural progenitor stem cells, and RNA - seq studies.

«Using the NanoChIP - seq platform invented in Singapore, we created comprehensive epigenetic profiles for both GC and normal tissues,» explained team leader Professor Patrick Tan.

Non-targeted transcription factors motifs are a systemic component of ChIP - seq datasets.

Also reinforcing our recent observations [Submitted], both ChIP - and RNA - Seq revealed that DAXX represses positive modulators of autophagy.

Changes in RNA - seq profiles of silver foxes (Vulpes vulpes) after 50 generations of selection on tame / aggressive behaviors.

In addition to clarifying the roles of Mfd and UvrD, the research generally heralds the use of the new XR - seq technique in mapping and studying excision repair processes.

We also found that 83 per cent of the cDNAs were reproduced perfectly in the RNA - Seq set at the level of the coding sequence of the transcript (the bit that actually codes for protein).

This latest version of the Chromatrap ChIP - Seq kit enables ChIP to be performed from as little as 50 mg of a wide range of extracted tissue samples.

a.) you accept that this order will end the protest and hence achieve the pressing and substantial objective of facilitating access to the park by others [para. 91], but then you fall prey to overbreadth and «absolute ban» [para. 104 et seq]; OR

GUIDE - seq enables genome - wide profiling of off - target cleavage by CRISPR - Cas nucleases.

«Unlike previous enhancer assays for mammals, SIF - seq includes the integration of putative enhancers into a single genomic locus,» says Visel.

Break - seq combines an existing double strand break labeling system the researchers had used in an earlier study with next generation sequencing to map chromosome breaks with improved sensitivity and resolution.

Ribose - seq takes advantage of this reaction with the hydroxyl group to launch the process of identifying the genomic spectrum of ribonucleotide incorporation.

Because of the usefulness of this information, we set ourselves the goals of constructing a zebrafish gene set based on RNA - Seq alone and then identifying the highest quality models.

He also pointed out that RNA - Seq coupled with paired - end libraries can be used to detect fusion transcripts in a straightforward fashion.

The study, enabled by the National Genomics Infrastructure (NGI) and National Bioinformatics Infrastructure Sweden (NBIS) of SciLifeLab, utilized a RNA - Seq approach to map the process where unprotected oyster embryos start to develop shell structures.

A typical 200 sample RNA - seq project requires about 1 week for pre-processing and quantification and 2 to 8 weeks for the actual analysis.

scNMT - seq allows researchers to study the effects of changes in single cells and could provide conclusive evidence that they can develop into major differences both in development and disease.

Many of the RNA - Seq generated models appeared to be fragments and we needed to remove them by filtering our results before we could include our findings in the Ensembl gene set.

He served on State Government inter-departmental committees responsible for Sugar Industry Reform, Rural Adjustment, Queensland's Greenhouse Response Strategy, Clean Coal Technology, Sustainable Housing, SEQ Rural Futures and the Energy Policy.

«However, because SIF - seq only requires DNA sequence from a mammal and can be used in a variety of cell types, it should be possible to compare the neuronal enhancers present in a large genomic region from human to the neuronal enhancers present in the orthologous chimpanzee region.

sNuc - Seq bypassed those problems by using individual nuclei extracted from cells as a starting point instead.

SPLiT - seq significantly lowers the barrier for labs that want to do single cell profiling but can't afford expensive, specialized equipment.»

The UNC researchers performed XR - seq scans on cells from UV - exposed plants — Arabidopsis thaliana, the «lab rat» of plant research also known as thale cress or mouse - ear cress.

«fCLIP - seq stands for formaldehyde crosslinking, immunoprecipitation, and sequencing.