Sentences with phrase «sequencing studies published»

As a follow - up to my previous post, Disease - causing Mutations Discovered by NGS in 2011, I've attempted to compile cancer genome and exome sequencing studies published last year.

As a result, we're seeing exome and genome sequencing studies published all over the place, not just in genetics / genomics journals but also many that focus on specific tissues (e.g. blood) or diseases (e.g. cancer, metabolic diseases, vision disorders, you name it).

Not exact matches

The researchers used next generation sequencing technology, RNA sequencing, to reveal «in exquisite detail» the blueprint for making milk in the human mammary gland, according to Laurie Nommsen - Rivers, PhD, RD, IBCLC, a scientist at Cincinnati Children's and corresponding author of the study, published online in PLOS ONE, a journal of the Public Library of Science.

In a study published last June in the Journal of Human Genetics, researchers sequenced the mitochondrial DNA of 12 Yamnaya individuals, along with their immediate predecessors and descendants.

Data published by the International Human Genome Sequencing Consortium indicate that somewhere between 113 and 223 genes present in bacteria and in the human genome are absent in well - studied organisms — such as the yeast Saccharomyces cerevisiae, the fruit fly Drosophila melanogaster and the nematode Caenorhabditis elegans — that lie in between those two evolutionary extremes.

In a study published in the May 29, 2014, edition of Molecular Ecology Resources, Duke researchers Peter Larsen, Ryan Campbell and Anne Yoder used high - throughput sequencing on sifaka blood samples to generate sequence data for more than 150,000 different sifaka antibodies — protective molecules that latch on to bacteria, viruses and other foreign invaders in the body and fight them off before they cause infection.

A comprehensive and technically sophisticated study published in the May 7 issue of Science, «A Draft Sequence of the Neandertal Genome,» by Max Planck Institute evolutionary anthropologists Richard E. Green, Svante Pääbo and 54 of their colleagues, demonstrates that «between 1 and 4 % of the genomes of people in Eurasia are derived from Neandertals» and that «Neandertals are on average closer to individuals in Eurasia than to individuals in Africa.»

This study was a systematic review that evaluated published research investigations that have directly measured the calorie cost of yoga and calculated the metabolic intensity (METS) of individual yoga poses including a popular sequence called «sun salutations.»

Researchers at Umeå University show in a new, detailed structural study, published in the journal Nature Communications, how the binding of the signal - sequence triggers a number of structural changes within the SRP particle.

A new study published in The Journal of Molecular Diagnostics has established that hybrid - capture sequencing is the method of choice for sequencing «actionable» gene mutations across the most common forms of lymphoid cancer.

In a study published September 22, 2015 in Nature Communications, a team led by Northen used seven bacterial isolates from desert biocrusts, one of them the cyanobacterium Microcoleus vaginatus - sequenced by the DOE JGI — that had been the focus of earlier work.

Described in a study published in the journal Nature Communications, this novel approach uses high - speed atomic force microscopy (AFM) combined with a CRISPR - based chemical barcoding technique to map DNA nearly as accurately as DNA sequencing while processing large sections of the genome at a much faster rate.

In a study published online today in Genome Research, researchers used genome sequencing to understand the spread of MRSA in a resource - limited hospital with high transmission rates.

In a study published February 14, 2017 in the journal Genome Biology, an international team including researchers at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science User Facility, report sequencing the genomes of 10 novel Aspergillus species, more than doubling the number of Aspergillus species sequenced to date.

Peter Forster, a geneticist at the University of Cambridge, says mistakes happen a lot — between 60 percent and 70 percent of published studies of sequences of human mitochondrial DNA contain significant errors.

To demonstrate use of the new nomenclature, the authors of the study review recently published news species descriptions in the ichthyological literature that include DNA data and apply the GenSeq nomenclature to sequences referenced in those publications.

For the study, which was published in Nature Communications, the group performed whole genomic sequencing on 30 individual tumors classified as liver cancer displaying a biliary phenotype.

The study, published in Nature Communications, looks at epigenetic changes called DNA methylation, where methyl group chemicals modify DNA without changing its sequence.

The first study to sequence and analyze the entire genome of a HeLa cell line, along with access to its sequence data, has been published Aug. 7 in its final version, by G3: Genes Genomes Genetics, an open - access, scientific journal of the Genetics Society of America.

In a study published in Cell Research, Chinese scientists from Zhejiang University and BGI have completed the genome sequencing and analysis of the endangered Chinese alligator (Alligator sinensis).

A new study published in Cell reports these aquarium oddities can modify the proteins found in their bodies without having to change the basic sequence of their DNA blueprint.

A University of Colorado Cancer Center study published in the journal Oncogene used next - generation sequencing technologies to perform the most detailed DNA - based analysis to date of 25 commonly used bladder cancer cell lines, allowing researchers to match patient tumors with their closest genetic cell line match, and demonstrated genetic alterations that may make cells more or less sensitive to common therapies.

The new study, published online tomorrow in the Proceedings of the Royal Society B, examines partial sequences of the mitochondrial DNA (mtDNA) from wild chimpanzees in nine different groups.

The study, published in the May 8 issue of the Journal of the Royal Society Interface, shows that people in Chicago and Paris make their secondary trips — those in addition to their primary commutes — in a consistent and expeditious manner, using only 17 of more than 1 million possible trip sequences for up to five secondary locations.

As Wroblewski, Parham, and co-authors explain in a PLOS Biology study published online today, they analyzed stool samples dating back 15 years and sequenced immune system genes from 125 chimpanzees.

«The present success in selective fabrication of ABA and ABC trilayer graphene would widen the feasibility of graphene - based nano - electronic devices with variable layer numbers and stacking sequences,» conclude the researchers in their study published in the journal NPG Asia Materials.

The study, published this week in mBio ®, an open - access journal of the American Society for Microbiology, highlights the advances in genomic sequencing that now enable precise tracking of bacterial strains used in biological warfare and terrorist attacks around the world.

Lücking and his team collected and sequenced DNA from 376 samples of the leafy lichen and discovered 126 new species among them, many with striking physical differences, according to their study published in June.

Indeed, many others have published various studies on HeLa's DNA sequence — and some scientists this week suggested that the HeLa genome is already essentially in the public domain.

In a study published December 9th in Cell Host & Microbe, researchers used genome sequencing to trace the introduction and spread of the virus in Liberia — the second worst - affected country.

A study published in JAMA Pediatrics supports the use of genetic testing, especially with sequencing, as first - line diagnostic method for young children with seizures.

700 billion DNA sequences The study was published in the scientific journal Nature Communications.

Our findings are in agreement with a recently published study by Oskarsson et al. (2015) in which Tg mice injected through the tail vein with in vitro — generated aggregates from synthetic peptides containing the sequence of IAPP developed a higher percentage of IAPP aggregates in the pancreas than did untreated controls when subjected to a high - fat diet.

NEW YORK, July 11, 2017 / PRNewswire / — In a study published today in the July 11, 2017 issue of Neurology ® Genetics, an official journal of the American Academy of Neurology, researchers at the New York Genome Center (NYGC), The Rockefeller University and other NYGC member institutions, and IBM (NYSE: IBM) have illustrated the potential of IBM Watson for Genomics to analyze complex genomic data from state - of - the - art DNA sequencing of whole genomes.

In a separate study which is not yet published, this team with Professor Steve Rozen, from the NBD Programme at Duke - NUS, identified many new mutations in the PCM1 gene from ASD patients from next - generation sequencing.

The study, which was based on over seven billion DNA sequences and which is published in Nature Communications, found no genetic traces of viruses in these forms of cancer.

Our guest published a historic paper less than one month ago (available here), describing the first comprehensive study of an individual, combining genomic (genome sequence), transcriptomic (genes turned on / off), proteomic (the total complement of proteins - or protein profiles), metabolomic (complete metabolic analysis), and autoantibody profiles.

Their findings, released in a study published in EPJ A, reveal a sequence of fragmentations, relevant to developing a specific kind of fusion reactions and in astrophysics.

In their paper published in the journal Science Advances, the team describes their sequencing study of three types of plants and the comparisons they made with other plants that had been previously sequenced, and why they believe that what they found might help such trees survive as the planet warms.

For their study, published in Science, the scientists used a mathematical model that analyzed genome sequencing and epidemiological data for 32 types of cancer.

The new study, published Tuesday in Nature Communications, sequenced the genetic information of 13 individuals who lived on the Great Hungarian Plain during the 5,000 years leading up to the Iron Age.

Previous studies have published bay scallop expressed sequence tags [23, 24] and transcriptome sequences [17], which provided valuable resources for gene cloning.

In a study published ahead the week of January 8, 2018 in the Proceedings of the National Academy of Sciences, a team led by researchers at the Technical University of Denmark (DTU), the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE's Joint BioEnergy Institute (JBEI), led by Lawrence Berkeley National Laboratory (Berkeley Lab), report the first results of a long - term plan to sequence, annotate and analyze the genomes of 300 Aspergillus fungi.

In a study being published online today in the journal Cell, researchers in the laboratory of Gladstone Senior Investigator Benoit Bruneau, PhD, employed stem cell technology, next - generation DNA sequencing and computing tools to piece together the instruction manual, or «genomic blueprint» for how a heart becomes a heart.

Several whole - genome sequencing studies of cancer were published last year.

In a paper published in Nature in September 2013, we describe results of the largest study to date integrating RNA and genome sequencing data from multiple human populations, and provide a comprehensive map of how genetic variation affects the transcriptome.

The study, published today in the journal Proceedings of the Royal Society B, analyzed the vocal sequences of seven different species of birds and mammals and found that the vocal sequences produced by the animals appear to be generated by complex statistical processes, more akin to human language.

The work is complemented by studies from other researchers published in the Proceedings of the National Academy of Sciences and Cell, which indicate that similar phenomena occur in E. coli cells and sequenced human tumors.

Sequences were mapped to the published rock pigeon genome to begin studying the species until the band - tailed pigeon genome was available.

The paper, «Genome - wide association study identifies sequence variants on 6q21 associated with age at menarche,» is published in the online edition of Nature Genetics, at www.nature.com/ng, and will be published in an upcoming print edition of the journal.