First, they did a quantitative analysis of the anatomy of related fossils and extant animals to generate a hypothesis about the transition; next, they searched for possible
shifts in gene expression that correlated with the transition.
Not exact matches
The most promising chemical — sulforaphane, a naturally occurring compound found
in cruciferous vegetables — tamped down glucose production by liver cells growing
in culture, and
shifted liver
gene expression away from a diseased state
in diabetic rats.
Scientists have
shifted from studying single molecules to investigating large complexes of interacting biological macromolecules involved
in processes such as metabolic pathways,
gene expression, and development of disease.
But when the UPR was chemically activated, Bmal1 stayed low during both light and dark phases, which caused a phase
shift in the
expression of circadian
genes.
In vitro experiments and high - throughput RNA sequencing revealed that CTCF deletion profoundly altered the B lymphocyte transcriptional program, shifting cells from a gene expression profile typical of the germinal center to one more similar to that seen in plasma cell
In vitro experiments and high - throughput RNA sequencing revealed that CTCF deletion profoundly altered the B lymphocyte transcriptional program,
shifting cells from a
gene expression profile typical of the germinal center to one more similar to that seen
in plasma cell
in plasma cells.
In the case of IGF2BP3 and B - cell leukemia, the overall effect of the RNA binding protein is to promote the proliferation of B cells by
shifting the
expression of a large number of
genes, Sanford said.
To determine whether
shifts in the balance of anterior and posterior field occurred during fin - to - limb evolution, Onimaru, postdoctoral researcher currently at Sharpe's lab (CRG), and his colleagues carefully compared the
expression, function and regulation of
genes involved
in anterior - posterior patterning
in pectoral fins of catsharks, with those of mice.
But 19
genes showed significant
shifts in expression between humans and apes.
What sort of changes
in the environment or lifestyle would drive such a rapid
shift in the
expression of
genes —
in this case
in the liver —
in humans and
in no other primate?»
Most likely, these happen because the
shift in marker
genes is a real effect, but some common technical factor is causing
expression values of expressed
genes to be globally correlated.
Recent theorizing within this tradition suggests that these
shifts may be manifested
in changes
in the relative frequency of particular cell types
in blood (Irwin and Cole, 2011) as well as
in the epigenetic programming and
gene expression of such cells (Miller et al., 2011a).