Now researchers at UC San Francisco have taken the first step toward a comprehensive atlas of gene expression in cells across the developing human brain, making available new insights into how
specific cells and gene networks contribute to building this most complex of organs, and serving as a resource for researchers around the world to study the interplay between these genetic programs and neurodevelopmental disorders such as autism, intellectual disability and schizophrenia.
Not exact matches
These proteins constantly move along the strands of our DNA, turning
specific genes on
and off to make sure
cells function as expected.
Lu's team will extract immune
cells called T
cells from the blood of the enrolled patients,
and then use CRISPR — Cas9 technology — which pairs a molecular guide able to identify
specific genetic sequences on a chromosome with an enzyme that can snip the chromosome at that spot — to knock out a
gene in the
cells.
Using a mouse model, the team also demonstrated that two processes during neurodevelopment are regulated by the
gene: proliferation — the replication of neuronal stem
cells that have the potential to become multiple different kinds of
cells, including neurons —
and migration — the movement of neurons to
specific locations in the brain during development.
Anne Goriely of the University of Oxford
and her colleagues took tumour
cells from men with benign testicular tumours
and looked for
specific mutations in the FGFR3
and HRAS
genes.
The results showed that, when applied, a long - term inhibition of Rho - kinase signaling increased the expressions of chondrocyte -
specific genes and differentiation markers in human chondrosarcoma 2/8
cells.
In those
cells the Esrp1
and Esrp2 proteins enforce epithelial -
specific splicing isoforms for hundreds of different
genes, as Carstens
and his team have shown in studies since 2009.
When they deleted YY1 from male
and female
cells and compared
genes that were differentially expressed on the X chromosome, they found 68 that were
specific to females, one that was
specific to males
and 11 that were shared.
Our
cells rely on RNAi — deploying diminutive RNA molecules such as microRNAs
and small interfering RNAs (siRNAs)-- to turn down activity of
specific genes.
Berninger
and others have previously shown that Sox2, Ascl1,
and other transcription factors — proteins that bind to
specific DNA sequences to control the activity of
genes — can induce the nonneuronal «support
cells» known as glia to turn into neurons.
The findings highlight
specific sets of
genes and the brain
cells they affect as being involved in regulating anxiety.
Researchers at the Center for
Cell and Gene Therapy at Baylor College of Medicine, Texas Children's Hospital
and Houston Methodist have developed an alternative treatment in which virus -
specific cells protect patients against severe, drug - resistant viral infections.
The Rho - kinase inhibition stimuli under low oxygen conditions (of 5 percent oxygen atmosphere), which is a condition corresponding to conditions in the body's cartilage, produced a more effective increase in chondrocyte -
specific gene expression
and synthesis of extracellular matrix components by HCS - 2 / 8
cells.
Of the 68
genes specific to females, many were related to immunity,
and at least two are known to be overexpressed in human female B
cells compared to male B
cells.
The researchers then isolated the B
cells from these mice
and delivered sgRNAs
specific for individual
genes to these
cells.
Epigenetic changes do not alter the information encoded in the DNA sequence itself but determine whether
and to what extent
specific genes are used by
cells.
Working with prepubescent mouse pups, Oatley
and his colleagues put a fluorescent tag on a
gene specific to stem
cells.
When the team measured
gene expression first in the stem
cells,
and then re-evaluated the
cells once they had become neurons, very
specific differences emerged between the
cells derived from bipolar disorder patients
and those without the condition.
Her research team placed the evolutionarily conserved castor (Cas)
gene, which encodes a zinc finger protein, in a genetic circuit with two other evolutionarily conserved
genes, hedgehog (Hh)
and eyes absent (Eya), to determine the fates of
specific cell progeny (daughters).
Cells can be transfected with selected genes with specific properties as a means of evaluating the mechanisms of interaction between cells and chemi
Cells can be transfected with selected
genes with
specific properties as a means of evaluating the mechanisms of interaction between
cells and chemi
cells and chemicals.
When Cas9
and the short guide RNA targeting a disease
gene are delivered into
cells, a
specific cut is made in the genome,
and the
cells» DNA repair processes glue the cut back together, often deleting a small portion of the genome.
Mammalian hairs
and avian feathers develop from a similar primordial structure called a «placode»: a local thickening of the epidermis with columnar
cells that reduce their rate of proliferation
and express very
specific genes.
«Identifying targets essential to
cell survival in tumor suppressor
genes has long been an investigational goal with the aim of offering cancer -
specific vulnerabilities for targeted therapy,» said Ronald DePinho, M.D., professor of Cancer Biology, MD Anderson president,
and senior author for the Nature paper.
«Because many broadly expressed
genes that play key roles in essential cellular functions are under the control of
cell -
specific enhancers, the ability to affect enhancer function by knocking down eRNAs could potentially provide a new strategy for altering
gene expression in vivo in a
cell -
specific manner,» said Glass, noting that in his research, anti-sense oligonucleotides were developed in conjunction with Isis Pharmaceuticals, which suppressed enhancer activity
and reduced expression in nearby
genes.
Glk1 is a transcription factor, meaning it binds to
specific regions of DNA
and activates
genes involved in
cell death
and other plant immune responses.
Using the Single -
Cell Automatic Analysis and Isolation System developed in 2013, this group isolated single OSNs responding to specific odorants in a time - lapse single - cell - array cytometric manner and identified the OR gene through single cell polymerase chain reaction (P
Cell Automatic Analysis
and Isolation System developed in 2013, this group isolated single OSNs responding to
specific odorants in a time - lapse single -
cell - array cytometric manner and identified the OR gene through single cell polymerase chain reaction (P
cell - array cytometric manner
and identified the OR
gene through single
cell polymerase chain reaction (P
cell polymerase chain reaction (PCR).
Without my
specific blend of
cells, tissues,
genes,
and experiences, there would be no individual person to take these tests, no personality to try to understand what the results mean.
Thus, this cDNA derives from a
gene (oct - 2) that specifies an octamer binding protein expressed preferentially in B lymphocytes, proving that, for at least one
gene, a
cell -
specific transcription factor exists
and its amount is controlled through messenger RNA availability.
Rutgers University scientists have discovered the three - dimensional structure of a
gene -
specific transcription activation complex, providing the first structural
and mechanistic description of the process
cells use to turn on, or activate,
specific genes in response to changes in
cell type, developmental state
and environment.
The researchers used tools of epigenomic analysis to trace the
specific epigenetic switches controlling each of thousands of
genes in both mouse
and human retinal
cells as the
cells progressed through development.
In addition, the two
genes are turned on in areas that are part of the cortico - striatal - thalamo - cortical circuit, a loop of brain
cells connecting the cortex to
specific regions involved in processing emotions
and movement.
«The beauty of this study is that we now have a system in which we can investigate how a signaling
cell uses these two
genes Yorkie
and Scalloped, which have never before been shown in blood, to direct
specific cells to be made,» said Dr. Martinez - Agosto, associate professor of human genetics.
«Heart toxin reveals new insights into HIV - 1 integration in T
cell genome: Digoxin exposes link between T
cell activation
and targeted HIV - 1 integration in
specific genes.»
Hendrik is preparing the publication of the most complete woolly mammoth genome yet,
and Harvard geneticist George Church's team is already working to introduce
specific DNA variants —
genes for hair, tusks, subcutaneous fat
and cold resistance — into cultured
cells from Asian elephants (right).
Doing the screen involves using short pieces of RNA, called small hairpin RNAs, which are inserted into the
cell and are able to halt messages from
specific genes, keeping the
genes from making proteins.
The software allowed them to cluster
genes into groups associated with
specific molecular processes
and see which processes in tumors
and blood
cells were associated with each other.
The ability to manipulate
specific genes within these hippocampal chandelier
cells may allow for more meticulous studies of several diseases, including epilepsy
and schizophrenia, in which these neurons have been implicated.
Using bioinformatics tools to identify
and map out
specific components
and regulatory interconnections, the study team found highly dynamic activities during CD8 + T
cell responses: a distinct repertoire of super enhancers — groups of enhancers that interact with promoters to drive
gene transcription, new groups of enhancers that jump into activity only in the memory
cell stage,
and extensive re-wiring of regulatory circuits from one
cell stage to another.
While both species carry a core group of similar programs to regulate
gene activity, the researchers found that differences appeared in
specific tissue
and cell types.
For example, information stored in the chromatin silence liver
specific genes in heart
cells and vice versa.
Using biopsies of the patients» tumors collected before the start of treatment
and at the time patients developed resistance, the researchers performed large - scale genomic analyses to search for mutations
specific to the cancer
cells in all of each patient's 20,000
genes.
Working with Bhaduri, who has a background in statistics
and bioinformatics, Pollen
and Nowakowski began exploring how
specific classes of neurons
and stem
cells in the developing brain contribute to normal brain growth as well as to neurodevelopmental disease,
and have begun to build a comprehensive, open - source atlas of
gene expression across the developing brain, which they hope will serve as a resource for other scientists.
We first considered that this could be an experimental artifact, since it is common for developmental
genes to be expressed only in a few
specific cells, which could lead to the signals from the marks being diluted out
and not detected.
The researchers expected that in these quiescent stem
cells, the
genes specific for other tissues like skin
and brain would be marked by «stop» signals.
«Research on Drosophila guided this work,
and will be essential to identifying the
specific human factors
and their
genes that re-program egg
cells and make development possible.»
And, in the future, the potential to insert barcodes in genes and the development of in - line ID kits, that recognize specific strains of cell lines, could make it easier to verify new organisms and their protein products, and track products through supply chai
And, in the future, the potential to insert barcodes in
genes and the development of in - line ID kits, that recognize specific strains of cell lines, could make it easier to verify new organisms and their protein products, and track products through supply chai
and the development of in - line ID kits, that recognize
specific strains of
cell lines, could make it easier to verify new organisms
and their protein products, and track products through supply chai
and their protein products,
and track products through supply chai
and track products through supply chains.
Wong
and his team then inserted another
gene in the same
cell that made a modified recombinase, activated only when bound to a
specific drug; without it, the recombinase wouldn't cut the DNA.
Over a period of nine months, the team monitored
cell function
and growth by measuring levels of liver -
specific proteins
and genes.
This allowed them to identify
specific genes that are turned on or off by co-regulators of
gene function called TAZ
and YAP in the nucleus of developing mouse Schwann
cells.
«Understanding how Cas9 is able to locate
specific 20 - base - pair target sequences within genomes that are millions to billions of base pairs long may enable improvements to
gene targeting
and genome editing efforts in bacteria
and other types of
cells,» says Doudna who holds joint appointments with Berkeley Lab's Physical Biosciences Division
and UC Berkeley's Department of Molecular
and Cell Biology
and Department of Chemistry,
and is also an investigator with the Howard Hughes Medical Institute (HHMI).