Sentences with phrase «time nanopore»

Real - time nanopore sequencing and analysis of plant genomes in a tent in Snowdonia National Park

Same - day genomic and epigenomic diagnosis of brain tumors using real - time nanopore sequencing

Rapid draft sequencing and real - time nanopore sequencing in a hospital outbreak of Salmonella

Not exact matches

«By adjusting for a variety of parameters we were able to identify a pore size range, a nanopore, that best suited the purpose of the textile, one that is highly opaque visibly and at the same time highly transparent in the thermal wavelength range,» said Fan.

Using a portable, miniature DNA sequencing device (Oxford Nanopore MiniON), the researchers show for the first time that not only can the tool be used for examining environmental samples in extreme and remote settings, but that it can be combined with other methodology to detect active microbial life in the field.

Drndić and her colleagues tested their silicon nitride nanopore on homopolymers, or single strands of DNA with sequences that consist of only one base repeated several times.

As each base of the strand passes through the pore, it blocks some ions from passing through at the same time; amplifiers attached to the nanopore chip can register the resulting drop in electrical current.

Applying Nanopore Sequencing and Real - Time Antimicrobial Resistance Gene Analysis to Address the Threat of Carbapenem - Resistant Gram - Negative Organisms

I will review recent advances in the use of nanopore sequencing for clinical microbiology and human genetics, including our collaborations on viral and bacterial diagnostic sequencing, real - time surveillance, direct RNA and human whole - genome sequencing, and discuss the opportunities and barriers around moving to sequencing as a routine test in the clinic.

This presentation will review methods for which Nanopore sequencing and real - time antimicrobial resistance gene analysis can help to address the threat of CRO as a diagnostic tool in the Medical Microbiology Laboratory.

The audience fidgeted with eager impatience to hear Clive Brown of Oxford Nanopore present an update on their single - molecule, real - time sequencing technology.

This group will pursue a novel approach in which a nanopore is used to simultaneously detect electrical and fluorescent signals from many nanopores at one time.

Introduction to ONT devices and latest technology Wet lab training and best practices for sample quality and library preparation for Nanopore sequencing Running MinKNOW and real - time sequencing data handling Introduction to basecalling and analysis tools (ONT and opens source) for analysis of ONT data

We report unbiased metagenomic detection of chikungunya virus (CHIKV), Ebola virus (EBOV), and hepatitis C virus (HCV) from four human blood samples by MinION nanopore sequencing coupled to a newly developed, web - based pipeline for real - time bioinformatics analysis on a computational server or laptop (MetaPORE).

Using nanopore sequencing, metagenomic detection of viral pathogens directly from clinical samples was performed within an unprecedented < 6 hours sample - to - answer turnaround time and in a timeframe amenable for actionable clinical and public health diagnostics.

We report unbiased metagenomic detection of chikungunya virus (CHIKV), Ebola virus (EBOV), and hepatitis C virus (HCV) from four human blood samples by MinION nanopore sequencing coupled to a newly developed, web - based pipeline for real - time bioinformatics analysis on a computational server or la

Motivation: Single Molecule Real - Time (SMRT) sequencing technology and Oxford Nanopore technologies (ONT) produce reads over 10kbp in length, which have enabled high - quality genome assembly at an affordable cost.

npReader (jsa.np.f5reader) is a program that extracts Oxford Nanopore sequencing data from FAST5 files, performs an initial analysis of the date and streams them to real - time analysis pipelines.

The recently introduced Oxford Nanopore MinION platform generates DNA sequence data in real - time.

Dr Andrew Kilianski presents a talk for the MinION Community on Real - time Genomic Characterization of Viral Threat Agents using Nanopore Sequencing.

Motivation: The Oxford Nanopore MinION sequencer, currently in pre-release testing through the MinION Access Programme (MAP), promises long reads in real - time from a cheap, compact, USB device.

Real - time analysis of nanopore - based metagenomic sequencing from orthopaedic device infection

Nanopore sequencing provides a rapid, cheap and portable real - time sequencing platform with the potential to revolutionise genomics.