Sentences with phrase «uses allele frequency data»

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Estimation of allele frequency and association mapping using next - generation sequencing data.

Estimation of allele frequency and association mapping using next - generation sequencing data Kim, S. Y., K. E. Lohmueller, A. Albrechtsen, Y. Li et al. 2011.

Using large - scale empirical and simulated data sets, we found that the sample sizes used in the HapMap project are sufficient to capture common variation, but that performance declines substantially for variants with minor allele frequencies of < 5 %.

Therefore, we developed THE REAL McCOIL, Turning HEterozygous SNP data into Robust Estimates of ALelle frequency, via Markov chain Monte Carlo, and Complexity Of Infection using Likelihood, to incorporate polygenomic samples and simultaneously estimate allele frequency and COI.

Data were submitted to structure using 34 markers with models specified as «admixture» and «allele frequencies correlated» and 500,000 burn - in and 500,000 Markov chain Monte Carlo iterations (39).