In the last three years, Byamukama and graduate student Krishna Acharya have collected soil samples from 28 East River counties to determine
which resistance gene sources are still effective against the predominant races of Heterodera glycine, or soybean cyst nematode, in South Dakota.
«We can't stop this gene transfer, but when you know,
which resistance genes pathogens may harbor, you can personalize the antibiotic treatment.
Not exact matches
With respect to antibiotic
resistance, this novelty can be induced and we can trace the novelty to particular mutations arising absent
gene transfer; i.e. the
genes which give rise the
resistance were not present prior to the mutation, they are new sequences and not simply the activation of dormant
genes.
In particular, the PTPRF
gene,
which is known to suppress intracellular signals that are usually triggered by insulin binding to its receptor on the cell surface, may serve as a biomarker linking insulin
resistance with insufficient milk supply.
Professor Bruce Fitt, professor of plant pathology at the University of Hertfordshire, added: «This new understanding of plant defense through ETD suggests different operations of specific
resistance genes which will help us to be more successful in breeding new strains of crops for
resistance.
The scientists also generated a panel of (reconstructed) ancestral and existing TRIM5
genes (19 total), expressed them in cultured cell lines, and exposed the cells to 16 different retroviruses (lentiviruses and others) to see
which TRIM5 versions conferred
resistance to
which viruses.
New research presented here yesterday at the annual meeting of the American Association for the Advancement of Science (
which publishes ScienceNOW) finds that a
gene associated with increased risk of asthma is also linked to
resistance against a parasitic worm.
The first transgenic crop likely to be put forward for approval for open trials and commercial release is Bt cotton —
which has added
genes from the Bacillus thuringiensis bacterium, making the plant produce toxins that confer
resistance to some insect pests.
More than three fourths of all current antibiotics used to treat human infections are produced by Actinobacteria,
which at the same time carry antibiotic
resistance genes.
These instances «point to a future in
which direct sequencing of clinical samples allows same - day diagnosis, antibiotic -
resistance gene profiling and virulence
gene detection,» Walker and Beatson wrote.
Traditional antibiotics lay waste to most bacteria, but some cells inevitably survive, and their mutated
genes —
which are the source of
resistance — spread through the population.
Identifying where
resistance genes come from and how they spread somewhat compares to finding patient zero in an outbreak,
which is not an easy task.
The effort has already had one practical result: the discovery of two new
genes for
resistance to a race of wheat stem rust to
which there is virtually no
resistance in wheat.
«We found that as more «mixing» occurs between local dust and that
which comes from far off, the lower the contribution of the imported antibiotic
resistance genes.»
The wild Asian banana Musa acuminata malaccensis — the genome of
which was published last year (A. D'Hont Nature 488, 213 — 217; 2012)-- seems to be resistant, and researchers are experimenting with putting its
resistance genes into the Cavendish.
The former target, say, using
gene editing techniques to inactivate HIV receptors and achieve
resistance of blood cells to the virus (
which Sangamo BioSciences is working on in clincial trials) is different than helping parents who both carry
genes for Huntington's Disease to have a child that is free of the disease (a change to the genome that would be passed on to future generations and would likely not be very commonly needed).
Five decades on from the appearance of the first MRSA, multiple MRSA lineages have emerged
which have acquired different variants of the
resistance gene.»
The study demonstrates that the evolution of
resistance will likely be a severe roadblock for existing CRISPR
gene drive approaches,
which must be addressed before scientists could successfully employ them in the wild.
Analysing the samples, the team — involving experts from Newcastle University, the University of Strathclyde and Aarhus University — were able to measure the relative abundance of specific β - lactam antibiotic resistant
genes,
which can confer
resistance to a class of antibiotics that are of considerable medical importance.
That's because gut phage from mice treated with one drug carried high levels of
genes that confer
resistance to different drugs,
which means that the phage could serve as backup when bacteria must find ways to withstand a variety of antibiotics.
Bacteria can become resistant to the antibiotic either as the result of a spontaneous mutation or by picking up an appropriate «
resistance gene» (
which codes for a protein that confers
resistance) from another bacterium via genetic exchange.
«If we can figure out
which genes influence where fat is deposited, it could help us understand the biology that leads to various health conditions, such as insulin
resistance / diabetes, metabolic syndrome, and heart disease.»
The researchers also didn't find the
gene MDR1,
which encodes a drug transporter often responsible for
resistance to multiple drugs.
The researchers, led by Dr Charles Wondji, used a wide range of methods to narrow down how the
resistance works, finding a single mutation in the GSTe2
gene,
which makes insects break down DDT so it's no longer toxic.
The genetically manipulated agrobacteria, carrying the
gene for PAT, were then used to infect the crop in
which resistance was required.
«It is incredibly tempting to assume that antibiotics are promoting the spread of
resistance by increasing the rate at
which bacteria share resistant
genes with each other, but our research shows they often aren't.»
In one instance, the investigators discovered a novel
gene conferring
resistance to the macrolide antibiotics,
which was a small 61 residue proline - rich peptide, said Topp.
The scientists have also detected
resistance genes for sulphonamides and another antibiotic in the treated wastewater —
which will be turned into snow at a nearby ski resort, in a relatively pristine part of a river basin, later this year.
Last summer, agribusiness giant Syngenta, based in Basel, Switzerland, conducted the first field trials of maize (corn) containing engineered mini-chromosomes, and showed that the mini-chromosomes,
which carried multiple
genes for insect and herbicide
resistance, were stable in the field.
Dana Kolpin of the US Geological Survey in Iowa City says that the findings highlight the complex issue of antibiotic -
resistance genes,
which will continue to be of concern as treated effluent becomes more widely used in regions that have scarce water resources.
It is the wild relatives of crops
which contain
genes for
resistance to disease and pests, stock for use in grafting and characteristics to improve the properties of the crops themselves.
Prof Bentzen from Dalhousie University said: «Although this study focused on MHC
genes in vertebrates, the evolutionary dynamics described in it likely apply to other
gene families, for example
resistance genes and those
which prevent self - fertilization in plants (self - incompatibility loci) that are caught up in their own evolutionary races.»
However, these
genes are rarely found in bacteria outside the wastewater treatment plants,
which suggests that — contrary to what was previously believed — the treatment plants do not pass on
resistance genes to bacteria that are hazardous to people.
The genome also revealed the location of
genes that may be involved in fighting off pathogens,
which will help scientists understand more about disease
resistance in pines.
Farmers are also trying to thwart
resistance by growing plants that lack the Bt toxins near their fields, cultivating populations of normal insects that could swamp the
resistance genes, says Randy Deaton, a Bt researcher at Monsanto,
which developed some Bt crops.
Both the carbapenem
resistance and the colistin
resistance genes are on separate plasmids,
which means in principle they could spread to other bacteria.»
The search turned up about 100
genes which appeared to govern melanoma cells»
resistance to being killed by T cells.
Then the team let loose a special strain of diamondback moth pupa, some of
which carried at least one copy of a
resistance gene to the Bt toxin.
Noticing an odd
resistance profile, first author Vincenzo Di Pilato, Ph.D., reanalyzed the genome data from the bacterium, and discovered the new
gene,
which is a variant on the colistin - resistant
gene, mcr - 1.
In favor of maintaining the
resistance is the rate at
which the
genes are shared.
The Yale - led study performed whole exome sequencing ¬ — a technique for sequencing all the expressed
genes in a genome ¬ — on TNBC tumors to identify mutations in specific
genes or pathways that may indicate response or
resistance to the standard of care,
which is anthracycline / taxane (ACT) chemotherapy.
Compared with SWP, «the only difference, really, is the meticillin -
resistance gene,» Enright says,
which shows that SWP is a retooled version of 80/81.
Researchers proved its utility by successfully mapping the multi-drug
resistance genes in a strain called Salmonella Typhi haplotype H58 —
which has recently emerged globally.
Dr Melita Gordon, from the University of Liverpool's Institute of Infection and Global Health, said: «Importantly, the antibiotic
resistance genes,
which have previously been carried on a separate genetic package, have now been incorporated into the main chromosome of the bacteria itself,
which is likely to make it easier for the Typhoid strain to retain these
resistance genes.»
They successfully pinpointed the exact spot in the chromosomal structure that is home to the
genes which makes it drug - resistant, known as an antibiotic
resistance island.
Dr Ton added: «Plant immunity that is controlled by a single
resistance gene, on
which most conventional breeding programs are based, is comparably easy to overcome by a pathogen.
They also want to be able to insert more subtle mutations, such as those reported in HIV - resistant individuals,
which could alter cell function just enough to confer
resistance but without fully deactivating the
gene and impeding cell function.
They identified several
genes whose absence conferred HIV
resistance, some of
which had been predicted by previous studies and others that had never been directly tied to HIV infection before.
This presentation will review methods for
which Nanopore sequencing and real - time antimicrobial
resistance gene analysis can help to address the threat of CRO as a diagnostic tool in the Medical Microbiology Laboratory.
In addition, the researchers also found that bacteria that are closely related to one another have similar
resistance genes,
which might be expected as bacteria pass their
genes from one generation to the next.