This form of interference
with bacterial gene regulation is also of pharmaceutical interest as it is known that pathogenic bacteria can protect themselves against attack by the immune system and the effect of antibiotics by forming biofilms, for instance on the epithelium of the respiratory system.
In 2010, the environment ministry put on hold the commercial planting of GM brinjal, an eggplant variety, equipped
with a bacterial gene that thwarts insect pests.
The most recent breakthrough was made by a team of British and American biologists who report they've successfully infused tobacco plants
with bacterial genes — a first step towards engineering crops that grow faster, offer higher yields and use less fertilizers.
Not exact matches
Clark also tested his own blood, where he found traces of B. burgdorferi along
with another distinct genospecies (a
bacterial species separated by divergence of
genes), Borrelia andersonii, usually found in rabbits.
The results show — for the first time, Briggs thinks — that the
bacterial genomes change
with depth: the micro-organisms at 554 metres carry more mutations in
genes that code for energy - related processes like cell division and biosynthesis of amino acids than are seen in their shallower counterparts.
Three options are on the table: tweak cereals so that they form symbiotic partnerships
with rhizobia as legumes do; colonise cereal roots
with other types of nitrogen - fixing bacteria; or transfer the
bacterial genes that make fertiliser directly into the crop plants.
Bacteria expressing enzyme in one cell (bright green), while genetically identical cells do not, remaining protected from antibiotic onslaught; image courtesy of Yuichi Wakamoto / Neeraj Dhar / John McKinney Some strains of nasty
bacterial infections, such as MRSA (methicillin - resistant Staphylococcus aureus), come loaded
with resistance to antibiotics built right into their
genes.
A
gene associated
with both protection against
bacterial infection and excessive blood clotting could offer new insights into treatment strategies for deep - vein thrombosis — the formation of a harmful clot in a deep vein.
When Fishel and Kolodner heard of the accumulation of mutations in cancer cells from patients
with familial colon cancer, they suspected that the
gene responsible would be similar to the
bacterial and yeast
genes they had studied.
We're still struggling
with the smallest
bacterial cell, in which we don't know what even one - fifth of the
genes do.
With the acquisition of a number of key
genes and lipids from a
bacterial symbiont, it would be possible for Loki - type cells to evolve a primitive membrane trafficking machinery and compartmentalization.»
To determine how similar a person's fingertip bacteria are to bacteria left on computer keys, the team took swabs from three computer keyboards and compared
bacterial gene sequences
with those from the fingertips of the keyboard owners.
The putative archaeal host existed in a stable symbiotic relationship
with one or more
bacterial species,
with the capacity for both
gene and lipid exchange between species.
The islands are now free to move into other
bacterial cells, bringing
with them new sets of
genes.
The Duke team has previously explored blood tests to examine a patient's RNA for
gene signatures to distinguish
bacterial and viral infections in the upper respiratory tract and is working
with a private company to develop potential diagnostics.
These crops, being embraced by big agriculture in the U.S., carry
genes that imbue them
with resistance to herbicides and lace their tissues
with a
bacterial toxin harmless to humans but fatal to pests that may try to feed on them.
He says this idea has «very profound» implications for the debate over the origins of
bacterial genes that are present in the human genome but absent in our closest relatives (Science, 8 June, p. 1903): The amount of conjugation Waters detected is «high enough to readily explain» the possible infiltration of
bacterial genesinto our DNA, meaning that conjugation could have happened quickly enough to add
genes only to humans, in the years since they split from the common ancestor they shared
with chimpanzees.
Bacterial conjugation relies on a ring of DNA called a plasmid
with the
genes necessary to build the mating bridge and shoot DNA across it.
Although Jack and Malcolm had never met F2F, they were a tight team
with a good rep on the Distributed Biology Network:
gene hunters who amplified
bacterial DNA from soil and water samples, shotgun sequenced it, and identified
genes that weren't in the catalogs.
Ten classifier
genes distinguished infants
with bacteremia from those without
bacterial infections in the test set.
Wick continues: «Our study shows that fungal hyphae not only provide soil bacteria
with an excellent infrastructure, but also a potential hot spot for
bacterial horizontal
gene transfer.
UCLA scientists used DropSynth to make thousands of
bacterial genes with different versions of phosphopantetheine adenylyltransferase, or PPAT (pictured).
Sixty - six classifier
genes were identified that distinguished infants
with and without
bacterial infections in the test set.
Bacteria share DNA
with other organisms
with which they come into contact, so an antibiotic - resistant
gene can transfer from one type of bacterium to another, and a
bacterial cell can become resistant to numerous antibiotics at once.
The new method circumvents the problem of not being able to culture many of these bacteria in the lab by transferring
genes from these bacteria into another
bacterial species that is easier to work
with.
It is the
bacterial equivalent of sex,
with two cells sidling up to each other and engaging in conjugation, or the swapping of
genes, except that they do not have to wait for progeny to see the benefits.
It turns out that Monocercomonoides has come up
with a workaround by borrowing some
bacterial genes that perform the same function, the scientists reveal online today in Current Biology.
In one of the most elaborate feats of synthetic biology to date, a research team has engineered yeast
with a medley of plant,
bacterial, and rodent
genes to turn sugar into thebaine, the key opiate precursor to morphine and other powerful painkilling drugs that have been harvested for thousands of years from poppy plants.
It is much longer and more complex than most viral or
bacterial genes, and it has sequences
with which other spider
genes can interact.
That won't happen
with the engineered variety because it carries a
bacterial gene encoding an enzyme that detoxifies bromoxynil.
Researchers have speculated that they could reverse this process
with bacterial DNA - cutting enzymes they have adapted for adding and subtracting
genes from mice and other multicelled organisms.
Whilst such studies provide a reservoir of
genes involved in
bacterial recognition and degradation in vitro the situation in vivo where hemocytes can interact
with other immune cells to optimize immune responses is likely to be more complex.
In the current paper, Hind used Yellow Pear tomatoes together
with a wild relative of tomato called Solanum pimpinellifolium to identify the FLS3
gene and show how it functions to reduce
bacterial growth.
Once the
bacterial cell signaling protein cagA reaches the host cytosol, it is capable of altering subsequent generations of progenitor cells, leading to the development of cancer through changes in mitotic activity, apoptosis, cellular assembly, and signaling.26 Although it should be noted that while the presence of the cagA protein doubles the risk of gastric cancer, cagA - negative strands also increase the risk of distal gastric cancer.27 Additional H pylori virulence factors include babA2, which encodes
bacterial adhesion
with gastric epithelial cells, and vacuolating cytotoxin A, which is encoded by the
gene vacA.28, 29 H pylori strains carrying some combination of the babA2, cagA, and vacA
genes were associated
with the highest risk of developing intestinal metaplasia.
Brady and coworkers amplify and sequence
bacterial DNA from environmental soil samples and then look for
gene clusters that encode enzyme systems likely to biosynthesize natural products
with preselected characteristics.
Researchers have shown they can distinguish between viral and
bacterial infections in children
with fever by profiling the activity of
genes in a blood sample.
«We were not terribly surprised by the resistance
genes that track
with bacterial family trees.
When scientists at the University of Delhi in India took soil samples from a pesticide dump and compared them
with samples from a cleaner control site, they reported that the soil from the waste site contained a higher concentration of
gene sequences from certain
bacterial groups, such as Pseudomonas, Novosphingobium and Sphingomonas, that are known to degrade common pesticides like hexachlorocyclohexane.
They can ensure that only bacteria
with intact synthetic
gene circuits survive, or confine bacteria to a target environment at 37 °C (body temperature) while inducing them to die at lower temperatures, as demonstrated during
bacterial exit from a mouse intestinal tract.
In bacteria, the ligand - PBP complex develops high affinity for transmembrane proteins such as Trg, and the chimeric Trg - HK protein allows activation of
gene expression
with one additional protein, a
bacterial response regulator [5].
METHODS:
Gene gun immunization is conducted with transgenic mice using the Abeta42 gene in a bacterial plasmid with the pSP72 - E3L - Abeta42 constr
Gene gun immunization is conducted
with transgenic mice using the Abeta42
gene in a bacterial plasmid with the pSP72 - E3L - Abeta42 constr
gene in a
bacterial plasmid
with the pSP72 - E3L - Abeta42 construct.
Working
with Carla Guimaraes from Whitehead Member Hidde Ploegh's lab, Carette subjected knockout cells to several
bacterial toxins to identify resistant cells and therefore the
genes responsible.
In the picture depicted, one of the two copies of the
gene of the mouse was replaced
with the lac Z cassette expressing the
bacterial beta galactosidase and its activity in the kidney is followed by staining.
A Hex cDNA
with a recognition sequence for
bacterial BirA ligase was linked via an artificial IRES consisting of a tandem array of repeated Gtx sequences to the
gene encoding Venus followed by a cytomegalovirus driven hygromycin - thymidine kinase dual selection cassette flanked by loxP sites.
The results of 16S rRNA
gene sequencing revealed an increase in the relative abundance of the Gram - negative
bacterial order Verrucomicrobia and Bacteriodetes,
with a reduction in the Gram - positive order Firmicutes.
Functional analysis showed significant differences between the metagenomes and the downstream
bacterial communities contained a high abundance of
genes associated
with antibiotic resistance (COG0294, 3570, 3231, 1357), replication and mobilization of DNA (COG3668, TIGR01629, TIGR02768) and membrane transporters (COG0488, TIGR02294)(Tables S6, S7, S8, S9, S10, S11).
Taken together, our data shows that exposure to effluent contaminated
with antibiotics promote resistance
genes in environmental
bacterial communities.
We selected 68
genes with putative immune - related functions, macroarrayed them and determined their expression profiles following
bacterial or trypanosome challenge.
As more researchers identify
bacterial genes with interesting functions, we can think about how to manipulate them natively for therapeutic treatments.»
We investigated the distal gut
bacterial communities of three healthy humans before and after treatment
with ciprofloxacin, obtaining more than 7,000 full - length rRNA sequences and over 900,000 pyrosequencing reads from two hypervariable regions of the rRNA
gene.