After years of studying
yeast genes in search of insights into how human DNA works, he was looking for a challenge.
Not exact matches
Here's how it works: Scientists identify the desired
genes in a plant or animal and insert them into a host such as
yeast.
Not to mention the
yeast you buy
in stores has undergone generations of aggressively
gene - altering processes to produce the «perfect» loaf.
The researchers also modified some of the plant, rat and
yeast genes, as well as the medium
in which the
yeast proliferates, to help everything work better together.
The result was an 18,000-fold improvement
in noscapine output, compared with what could be obtained by just inserting the plant and rat
genes into
yeast.
One - third of
yeast genes have counterparts
in the human genome, many of which are associated with diseases, such as cancer.
Yoshinori Ohsumi, the most recent prizewinner, used baker's
yeast to identify
genes crucial
in autophagy, the process by which cells recycle their components.
In yeast, for example, they've found that increasing the activity of a single
gene, called Sir2, can significantly extend life span.
The new compounds boost the activity of Sir2
in yeast and of an analogous
gene, SIRT1,
in human cells.
For instance, I can run a project where I delete a
gene in yeast to turn it from white to red.
Data published by the International Human Genome Sequencing Consortium indicate that somewhere between 113 and 223
genes present
in bacteria and
in the human genome are absent
in well - studied organisms — such as the
yeast Saccharomyces cerevisiae, the fruit fly Drosophila melanogaster and the nematode Caenorhabditis elegans — that lie
in between those two evolutionary extremes.
A class of small molecules found
in grapes, red wine, olive oil, and other foods extends the life of
yeast cells by approximately 70 % and activates
genes known to extend life span
in laboratory animals.
To answer this question, the researchers created numerous premature stop signs, known as nonsense mutations,
in test
genes in human and
yeast cells.
GENES that protect
yeast DNA from oxidising free radicals could one day lead to drugs that prevent cancer and ageing
in people.
Cobbling together the
genes of three different species, chemical engineer Jay Keasling (Discover's 2006 Scientist of the Year) of the University of California at Berkeley transformed a metabolic pathway
in yeast that allows the engineered microbe to produce a precursor to artemisinin, a compound used to treat malaria.
Upon joining the lab, Lee chose a high - risk project — «it sounded like more fun,» she says — aimed at determining whether a key
gene in the
yeast cell cycle, cdc2, was also present
in human cells.
Although the whole drive to understand the molecular basis of beer production involves modern tools that are used
in biotechnology, such as real - time polymerase chain reaction (PCR),
gene chips, proteomics, mass spectrometers, and so forth, genetic manipulation is not acceptable
in any form — not
in any of the raw materials or the
yeast.
The only trouble was that the Nasmyth lab was devoted entirely to the study of the HO
gene (involved
in mating - type switching)
in the budding
yeast Saccharomyces cerevisiae.
The nonredundant protein sets of flies and worms are similar
in size and are only twice that of
yeast, but different
gene families are expanded
in each genome, and the multidomain proteins and signaling pathways of the fly and worm are far more complex than those of
yeast.
«
In various beer yeast lineages, specific genes have been amplified, deleted, or altered to optimize growth in beer fermenters and beer taste.&raqu
In various beer
yeast lineages, specific
genes have been amplified, deleted, or altered to optimize growth
in beer fermenters and beer taste.&raqu
in beer fermenters and beer taste.»
Already, researchers have used CRISPR / Cas9 to edit
genes in human cells grown
in lab dishes, monkeys (SN: 3/8/14, p. 7), dogs (SN: 11/28/15, p. 16), mice and pigs (SN: 11/14/15, p. 6),
yeast, fruit flies, the worm Caenorhabditis elegans, zebrafish, tobacco and rice.
RNA - guided
gene drives can efficiently and reversibly bias inheritance
in wild
yeast.
She still does not know why he considered her at the time — «Maybe it was just my enthusiasm,» she wonders — but he nonetheless became her mentor as she studied the transcriptional activation of the cell - cycle regulated HO
gene in the
yeast Saccharomyces cerevisiae.
They found numerous
genes activated
in the XYL regulon - controlled
yeast that upregulated pathways involved
in growth, such as cell wall maintenance, cell division, mitochondrial biogenesis and adenosine triphosphate (ATP) production.
Finally, the authors addressed two major challenges for any study that generates large data - sets of individual
genes and proteins
in model organisms like
yeast: How to assemble the data into coherent maps?
«First, we had to figure out much better methods to find human counterparts of
yeast genes, and then we had to arrange the humanized set of
genes in a meaningful way,» explained Peng, now Assistant Professor of Computer Sciences at University of Illinois, Urbana - Champaign.
The researchers discovered the actions of multiple independent meiotic drivers
in fission
yeasts in an earlier study, reported
in 2014
in eLife, but didn't know which
genes were responsible, or how they destroyed gametes that didn't inherit the
genes.
Not only did the researchers figure out how poppies carry out this missing step, he says, but they also transferred the
gene to
yeast and showed it works
in microbes as well.
Also, most DIY biologists are interested
in building genetic circuits
in bacteria or
yeast, and they can generally do this using well - established techniques, such as SLiCE (seamless ligation cloning extract), and with
genes that have been synthesized by commercial suppliers or that can be obtained from the iGEM registry.
Fishel and Kolodner had been studying the bacteria and
yeast genes involved
in the repair process that operates when base pairs slip out of alignment during replication, producing mismatches of bases.
When Fishel and Kolodner heard of the accumulation of mutations
in cancer cells from patients with familial colon cancer, they suspected that the
gene responsible would be similar to the bacterial and
yeast genes they had studied.
Dr Nadeau added «Our results are even more surprising because the cortex
gene was previously thought to only be involved
in producing egg cells
in female insects, and is very similar to a
gene that controls cell division
in everything from
yeast to humans.»
After working on the genetics of
yeasts during a Ph.D.
in pharmacy at the University of Valencia, Gil moved to the United States for a postdoc on human suppressor
genes.
They identified and isolated a
gene family with GNA1 function, which was confirmed by enzyme activity assays
in vitro and by its capacity to restore growth
in yeasts lacking GNA1.
This group found that DNA damage was repaired when human hereditary disorder type mutations (xrs2 mutations) were introduced
in yeast XRS2
genes, but it was repaired with more errors than a DNA sequence with no mutations.
The research was done
in brewer's
yeast, but it can potentially be applied
in insects, aquatic organisms and plants using a new
gene editing technique known as CRISPR - Cas9.
But while this study has proved that the technique works
in a simple organism, it could also be applied to other bacterial species,
yeast or even human cells to find useful information about how
genes are controlled and how they can be manipulated.
So what we did is we wanted to ask what happened
in the history of a pair of
gene [s]
in, regular role, brewer's and baker's
yeast that is used these days.
The results, published
in the April issue of G3:
Genes Genomes Genetics, a publication of the Genetics Society of America, suggest that winemakers attempting to develop improved wine
yeasts will need to look to creating hybrids with more exotic strains.
What we were surprised to find out was that the real differences we could detect
in terms of when we did the swap experiments to say which
yeast could outperform the other — what we learned was that the GAL1
gene, that the part [of] that, the DNA sequence is outside of the GAL1
gene, it acts as a switch to turn up or turn down GAL1 expression, that had evolved considerably from the ancestral situation; and same for the GAL3.And then what had happened was that each function had been optimized, that GAL3 had sort have been tuned to be sort of a loosely regulated kind of available anytime sensor of galactose and GAL1 had evolved to be an incredibly tightly regulated,
in fact, it's the most tightly regulated
gene you know of
in yeast.
And what we did is,
in order to figure all this out, sort of trace the path of evolution, we did a whole bunch of sort of, swapping experiments, where we swappedGAL1 for GAL3and we swapped the ancestral protein type of protein
in for GAL1or for GAL3, and we even swapped the GAL1and GAL3
in for the ancestral protein,
in another
yeast that didn't have the duplication take place; and from this whole series of experiments, we really expected to find out pretty much how the proteins have changed; and the surprise was that most of [the] adaptive change that had taken place wasn't
in the protein, it was
in how the two
genes were regulated.
They tested their system on a pair of
yeast transcription factors and used the data to predict which
yeast genes the proteins would target, they report
in this week's Science.
For instance, the
yeasts used to brew the Japanese beverage sake carry
genes not found
in wine and ale
yeasts.
A
yeast retrotransposon called Ty3, the researchers have found, is especially judicious: it always inserts itself
in safe places, outside
genes rather than inside them, and only near
genes of which a
yeast cell has many copies.
So, I'll just say a little more about why
yeast; which is, over the decades,
yeast molecular biologists have devised so many powerful tools that allow you to make very precise changes
in yeast,
in their DNA; exquisite control, where you can change a single base that you want
in a particular place, you can put a whole
gene in, take a whole
gene out, swap
genes etc..
The approach hadn't seemed within close reach until geneticists last year demonstrated
gene drive
in fruit flies and
yeast by harnessing a
gene - editing technique called CRISPR / Cas9.
In this episode, Scientific American news editor Phil Yam discusses how veterinarians, physicians and multinational food companies need to work together in the global fight against animal - borne infectious diseases; and University of Wisconsin evolutionary biologist Sean Carroll talks about recent research tracking the evolution of yeast genes with specific functions descended from a single, duplicated gene with multiple function
In this episode, Scientific American news editor Phil Yam discusses how veterinarians, physicians and multinational food companies need to work together
in the global fight against animal - borne infectious diseases; and University of Wisconsin evolutionary biologist Sean Carroll talks about recent research tracking the evolution of yeast genes with specific functions descended from a single, duplicated gene with multiple function
in the global fight against animal - borne infectious diseases; and University of Wisconsin evolutionary biologist Sean Carroll talks about recent research tracking the evolution of
yeast genes with specific functions descended from a single, duplicated
gene with multiple functions.
In yeast that lack the gene for either Cue1p or Ubc7p, the misfolded protein remained in the ER and was never tagged with ubiquiti
In yeast that lack the
gene for either Cue1p or Ubc7p, the misfolded protein remained
in the ER and was never tagged with ubiquiti
in the ER and was never tagged with ubiquitin.
So you're doing the work
in yeast and you are looking at this particular
gene construct and an ancestral version of it.
For Longo, it all added up: The same growth
genes that regulate aging and protect against age - related diseases
in yeast, mice, and roundworms might have an identical effect
in humans.