One of the outputs of the evolutionary analysis of genomes is the reconstruction of phylogenetic trees that map out common ancestors, their descendants, and the relationships between the different species. (sciencemag.org)
Assembly of mitochondrial genomes was performed using the following strategy: species - specific mitochondrial reference genomes were selected from initial species identification based on phylogenetic analyses of amplicon sequences (results not shown). (rspb.royalsocietypublishing.org)
Towards a phylogeny of the Metazoa: evaluating alternative phylogenetic positions of Platyhelminthes, Nemertea, and Gnathostomulida, with a critical reappraisal of cladistic characters. (eol.org)