The phrase "different ways" means doing something in various or diverse methods or approaches. It refers to finding alternative or unique ways to accomplish a task or achieve a goal. Full definition
Mother support groups have now spread worldwide working in different ways in different places. (lcgb.org)
Actual cash value is one of many different ways of assessing how much an insurer will pay out in the event of a claim; there are other models that your insurer may use. (4autoinsurancequote.com)
It's found in many other organisms, not just humans, and functions in many different ways in different species; these genes don't do one single thing. (discovermagazine.com)