He has helped generate and interpret mountains of data through
microbial gene sequencing efforts, showing how microbes influence human well - being.
Once this process is complete, project scientists have a good idea
which microbial genes are contained in each sample and what biological jobs the microbes perform.
«Even though a microbial genome is one - thousandth the size of the human genome, the total number
of microbial genes in [the human] body is much greater than human genes because you have so many different species,» says Weinstock.
Elucidating functions of commensal
microbial genes in the mammalian gut is challenging because many commensals are recalcitrant to laboratory cultivation and genetic manipulation.
«To move beyond cataloging microbes, we will need new tools to rapidly determine
microbial gene function and monitor the chemicals microbes use to communicate and interact with their environment, and new ways to visualize and model those interactions,» said Eoin Brodie, a staff scientist at Lawrence Berkeley National Laboratory's Earth Sciences Division and an author of the proposal.
These drug - bug interactions could
make microbial genes just as important as a person's genes for predicting how a drug will affect someone, says Matthew Redinbo of the University of North Carolina at Chapel Hill.
The South Platte River system picks up
microbial genes for resistance to sulphonamide and tetracycline antibiotics as its waters flow past human settlements
«By examining the DNA outside the bacterial chromosomes, you may get a better understanding of the dynamics by which these elements may mobilize thereby
controlling microbial genes,» Fischetti says.
For instance, the Human Microbiome Project (HMP)(Turnbaugh et al, 2007; Peterson et al, 2009; Huttenhower et al, 2012) and MetaHIT (Qin et al, 2010) have generated maps of bacterial species abundances throughout the human body, reference genomes, and catalogs of more than 100 million
microbial genes assembled from shotgun sequencing of in vivo communities.
A number of studies have shown that random fluctuations in
microbial genes trigger some microbes to hunker down into a dormant, drug - resistant state.
Stilianos Louca (Biodiversity Research Centre in Vancouver, Canada), the Grand Prize winner and Category winner of Ecology and Environment, presented his results on how the dynamics of metabolically
important microbial genes can become independent of the taxonomic composition of microbial communities.
«I think it's important [for journals] to be discussing this, but I think it's unrealistic to think that journals can and should play the role of the sole enforcer,» says Claire Fraser, director of The Institute for Genomic Research in Rockville, Maryland, which posts a range
of microbial gene sequences online.
Researchers at the US Department of Energy (DOE)'s Joint BioEnergy Institute (JBEI) have
identified microbial genes that can improve both the tolerance and the production of isopentanol in engineered strains of Escherichia coli.
In a study to be presented on Feb. 5 at the Society for Maternal - Fetal Medicine's annual meeting, The Pregnancy Meeting ™, in Atlanta, researchers will present findings from a study titled, Maternal Diet Alters the Breast Milk Microbiome and
Microbial Gene Content.
Khosla, 34, has been investigating
the microbial genes that make polyketides, a class of complex molecules that fungi and bacteria use for chemical defense.
During the past decade, Boyden and others have found ways to snip
the microbial genes that code for the light - sensitive proteins and insert them into brain cells, thus making those neurons also responsive to light.
Working out the functions of
these microbial genes is a big challenge because many of the microbes that live within us are extremely reluctant to grow when cultured under laboratory conditions.
Collaborators at Human Longevity, Inc. sequenced
the microbial genes extracted from each participant's stool sample and used that information to determine which species were living where, and the relative abundance of each.
A first step is to design studies that separate the effects of
microbial genes from the genes of their animal host, says Herbert Virgin, an immunologist at the Washington University School of Medicine in St. Louis in Missouri.
«The development of metagenomic sequencing of the total DNA in a microbial sample from the human body has allowed us to estimate the abundance of specific microbes and
microbial genes.
Most strikingly, the warmest soil sample in Jansson's study — the spongy bog soil — revealed an array of
microbial genes and proteins involved in the production of methane, a greenhouse gas more than 20 times as potent as carbon dioxide.
Now in experiments in mice reported this week in Cell Metabolism, researchers at Joslin Diabetes Centers have highlighted the ways in which the host's genes interact with
the microbial genes to create such conditions, says senior author C. Ronald Kahn, M.D., Chief Academic Officer at Joslin Diabetes Center and Mary K. Iacocca Professor of Medicine at Harvard Medical School.
The genetic tools generated in this effort will allow researchers to more easily disrupt the activities of
microbial genes to understand how these organisms function in marine ecosystems and provide the capability to ask scientific questions in ways not currently possible.
● But add all the genes in our microbiome together and the figure comes out at between two million and 20 million
microbial genes and is known as the second genome
«This way we can link local environmental conditions to
microbial gene - and transcript profiles and in the future quickly determine the environmental status of samples of unknown character».
If so, we aim to pinpoint
the microbial genes whose loss increases the risk of IBD and other autoimmune diseases.